The Flexibility Papers, No. 1: First Principles for a Rare Disease Framework
Yesterday, FDA and the Reagan-Udall Foundation for the FDA convened a public meeting to kick off stakeholder engagement on FDA’s new Rare Disease Framework Initiative. And while there is no shortage of opinions about how FDA should approach rare disease drug development, this time the Agency is asking stakeholders to help build the framework itself.
We think that’s an opportunity worth seizing.
As we discussed in our recent post introducing the initiative, FDA has proposed an ambitious effort to develop a regulatory structure that makes fit-for-purpose approaches to rare disease drug development the norm rather than the exception. Importantly, FDA is not limiting its effort to another guidance document or a statement of regulatory philosophy. The Agency is interested in making a “quantum leap” where everything is on the table for consideration, including changes to regulations, guidance, internal processes, reviewer training, and organizational structures to make the application of regulatory flexibility that has historically been used on a case-by-case, more consistent, predictable, and durable.
We commended FDA for this approach, including its commitment to drawing on the experiences of patients, sponsors, researchers, and its own review staff to inform the framework’s development. After all, no statutory fix alone could build the comprehensive regulatory structure FDA envisions. Its success will depend on translating decades of experience with rare disease development into practical principles that can guide decisions across the Agency.
But where should FDA begin?
The Continuum of Rare Disease Drug Development
At yesterday’s public meeting, Hyman, Phelps & McNamara, P.C. (HPM) Director James Valentine spoke on behalf of the firm, offering several cross-cutting principles that we believe should guide the development of the framework.
Our perspective comes from extensive experience across rare disease drug development. HPM has been involved in roughly one-third of all new chemical entity approvals for orphan diseases, more than half of non-oncology novel surrogate endpoint Accelerated Approvals over the past decade, and the planning of more than two-thirds of all externally led Patient-Focused Drug Development (PFDD) meetings.
That experience has taught us that barriers to rare disease drug development arise just as often at the beginning of a program as at the end. We therefore strongly support FDA’s intention to develop a framework spanning the full development lifecycle – from opening more first-in-human INDs in the United States through making NDA and BLA approval decisions more predictable.
We also believe the framework must recognize that rarity is a continuum. While a disease affecting ten patients may present more acute development challenges than one affecting a thousand, ten thousand, or even two hundred thousand, there are challenges that are shared across that continuum. Ultra-rare diseases may provide a proving ground for novel regulatory approaches precisely because conventional development paradigms are least feasible in those settings. While such novel approaches should be applied consistently in the ultra-rare setting, those approaches should not just be reserved for those most challenging circumstances. Rather, the framework should create pathways that can be applied across the continuum of rare diseases, where scientifically appropriate, rather than confining them to the smallest patient populations.
But perhaps the most important change is one of mindset.
Resetting the Starting Point for FDA-Sponsor Interactions
As we noted in our earlier post, the legal standards for demonstrating safety and effectiveness do not change simply because a disease is rare. Yet that legal truism too often becomes the opening premise of FDA-sponsor discussions, with conventional development approaches treated as the default and sponsors left to make the case for departing from them.
This can put both sponsors and reviewers in a difficult position. Sponsors must repeatedly justify why traditional approaches may be infeasible or inappropriate, while reviewers may perceive flexibility as an exception to established expectations rather than an ordinary application of the regulatory standards to the circumstances before them.
Rather than beginning with a conventional development program and asking what deviations might be justified, FDA and sponsors could begin by considering the characteristics of the disease and product, the available scientific evidence, the seriousness of the condition, unmet medical need, and patient perspectives on clinical trial design, as well as benefit and risk. From there, both parties would share responsibility for identifying an appropriate development pathway.
That could mean examining whether a randomized controlled trial is feasible or necessary, whether conventional statistical thresholds are appropriate, or how mechanistic plausibility and real-world evidence might contribute to the evidentiary package. Earlier in development, it might mean reconsidering whether conventional toxicology packages or NOAEL-based safety margins appropriately reflect the circumstances of a particular rare disease and patients’ willingness to accept risk.
None of this requires abandoning scientific rigor or lowering the statutory standards. It requires asking a different first question: What regulatory approach is fit for this purpose?
The challenge for FDA’s initiative is to make that question the ordinary starting point for rare disease development, not one that sponsors must spend multiple meetings persuading reviewers to consider.
Introducing the Flexibility Papers
Of course, answering that question across the many dimensions of rare disease drug development will take more than a few minutes at a public meeting – or a single blog post.
Which brings us to The Flexibility Papers.
Taking a page from the Federalist Papers, the collection of essays that helped make the case for a new governing framework, HPM will be publishing a series of FDA Law Blog posts examining the principles, practical experiences, and specific regulatory approaches that we believe should inform FDA’s Rare Disease Framework Initiative.
Our aim is not simply to make the case for “more flexibility.” Rather, it is to help articulate how regulatory flexibility can be built into the structure of rare disease drug development and review, with sufficiently clear expectations that sponsors, patients, and reviewers can rely on its consistent application.
We’ll draw on HPM’s cross-cutting experience in rare disease development with colleagues whose work spans clinical development, regulatory science, patient engagement, statistical and evidentiary considerations, CMC and manufacturing, and other aspects of FDA regulation.
Future installments will take a closer look at specific challenges and opportunities throughout the development lifecycle, with an emphasis on translating lessons from actual regulatory experience into actionable recommendations.
And, in the spirit of the actual Federalist Papers, we intend for these essays to build toward something concrete. Between now and the close of the Federal Register comment docket, we’ll publish installments of The Flexibility Papers, ultimately consolidating our recommendations into a formal submission to the FDA docket.
As we know, and was reinforced yesterday, every day matters to rare disease patients and so we will do our best Hamilton impression to be writing like we are running out of time. We hope to contribute meaningfully to both FDA’s deliberations and the broader public discourse about what a fit-for-purpose rare disease regulatory framework should look like.
An Invitation to Help Shape the Framework
One of the most encouraging aspects of FDA’s initiative is the Agency’s decision to seek input before settling on the details of the framework. This creates a meaningful opportunity for the rare disease community to help shape not just individual policies, but the principles and structures that will guide regulatory decision-making for years to come. Today’s public meeting was an important first step in that process.
Patient and caregiver perspectives will be essential to that effort, as will the experiences of sponsors, including the smallest biotechnology companies confronting the practical realities of developing therapies for extremely small populations. FDA’s own review staff also have invaluable experience identifying both opportunities for flexibility and obstacles to its consistent application.
We encourage stakeholders to participate in this process, including by submitting written comments by December 11, 2026, to Docket No. FDA-2026-N-12214 associated with yesterday’s public meeting.
For our part, we look forward to engaging with FDA, the Rare Disease Innovation Hub, and the broader rare disease community as this initiative takes shape.